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Index
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C
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D
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E
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F
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G
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M
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N
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O
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P
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T
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W
A
Activity (class in renku.core.models.provenance.activities)
activity (renku.core.models.provenance.processes.Process attribute)
(renku.core.models.provenance.processes.Workflow attribute)
(renku.core.models.provenance.qualified.Generation attribute)
add_data_to_dataset() (renku.core.management.datasets.DatasetsApiMixin method)
add_dataset_tag() (renku.core.management.datasets.DatasetsApiMixin method)
add_indirect_inputs() (renku.core.models.cwl.command_line_tool.CommandLineToolFactory method)
add_indirect_outputs() (renku.core.models.cwl.command_line_tool.CommandLineToolFactory method)
add_step() (renku.core.models.cwl.workflow.Workflow method)
asjsonld() (renku.core.models.datasets.Dataset method)
(renku.core.models.datasets.DatasetFile method)
(renku.core.models.entities.Collection method)
(renku.core.models.entities.Entity method)
(renku.core.models.provenance.activities.Activity method)
(renku.core.models.provenance.activities.ProcessRun method)
(renku.core.models.provenance.activities.WorkflowRun method)
(renku.core.models.provenance.agents.Person method)
(renku.core.models.provenance.agents.SoftwareAgent method)
(renku.core.models.provenance.processes.Process method)
(renku.core.models.provenance.processes.Workflow method)
(renku.core.models.provenance.qualified.Generation method)
(renku.core.models.provenance.qualified.Usage method)
C
candidate_paths (renku.core.management.git.GitCore attribute)
check_email() (renku.core.models.provenance.agents.Person method)
check_ref_format() (renku.core.models.refs.LinkReference class method)
cmdline_tool_annotations() (in module renku.core.plugins.run)
Collection (class in renku.core.models.entities)
CommandInputParameter (class in renku.core.models.cwl.parameter)
CommandLineBinding (class in renku.core.models.cwl.parameter)
CommandLineTool (class in renku.core.models.cwl.command_line_tool)
CommandLineToolFactory (class in renku.core.models.cwl.command_line_tool)
CommandOutputBinding (class in renku.core.models.cwl.parameter)
CommandOutputParameter (class in renku.core.models.cwl.parameter)
commit() (renku.core.management.git.GitCore method)
contains_any() (renku.core.models.datasets.Dataset method)
convert_arguments() (in module renku.core.models.cwl.command_line_tool)
convert_default() (in module renku.core.models.cwl.parameter)
convert_run() (in module renku.core.models.cwl.workflow)
create() (renku.core.models.projects.ProjectCollection method)
(renku.core.models.refs.LinkReference class method)
create_dataset() (renku.core.management.datasets.DatasetsApiMixin method)
create_run() (renku.core.models.cwl.command_line_tool.CommandLineTool method)
(renku.core.models.cwl.workflow.Workflow method)
creators_csv (renku.core.models.datasets.Dataset attribute)
(renku.core.models.datasets.DatasetFile attribute)
cwl_prefix (renku.core.management.repository.RepositoryApiMixin attribute)
D
datadir (renku.core.management.datasets.DatasetsApiMixin attribute)
(renku.core.models.datasets.Dataset attribute)
Dataset (class in renku.core.models.datasets)
dataset_commits() (renku.core.management.datasets.DatasetsApiMixin method)
DatasetFile (class in renku.core.models.datasets)
DATASETS (renku.core.management.datasets.DatasetsApiMixin attribute)
datasets (renku.core.management.datasets.DatasetsApiMixin attribute)
datasets_from_commit() (renku.core.management.datasets.DatasetsApiMixin method)
DatasetsApiMixin (class in renku.core.management.datasets)
default_children() (renku.core.models.provenance.activities.WorkflowRun method)
default_ended_at_time() (renku.core.models.provenance.activities.Activity method)
(renku.core.models.provenance.activities.ProcessRun method)
(renku.core.models.provenance.activities.WorkflowRun method)
default_filename() (renku.core.models.datasets.DatasetFile method)
default_generated() (renku.core.models.provenance.activities.Activity method)
(renku.core.models.provenance.activities.ProcessRun method)
(renku.core.models.provenance.activities.WorkflowRun method)
default_id() (renku.core.models.datasets.Dataset method)
(renku.core.models.datasets.DatasetFile method)
(renku.core.models.entities.Collection method)
(renku.core.models.entities.Entity method)
(renku.core.models.provenance.activities.Activity method)
(renku.core.models.provenance.activities.ProcessRun method)
(renku.core.models.provenance.activities.WorkflowRun method)
(renku.core.models.provenance.agents.Person method)
(renku.core.models.provenance.processes.Process method)
(renku.core.models.provenance.processes.Workflow method)
(renku.core.models.provenance.qualified.Generation method)
default_influenced() (renku.core.models.provenance.activities.Activity method)
(renku.core.models.provenance.activities.ProcessRun method)
(renku.core.models.provenance.activities.WorkflowRun method)
default_inputs() (renku.core.models.provenance.activities.ProcessRun method)
(renku.core.models.provenance.activities.WorkflowRun method)
default_invalidated() (renku.core.models.provenance.activities.Activity method)
(renku.core.models.provenance.activities.ProcessRun method)
(renku.core.models.provenance.activities.WorkflowRun method)
default_label() (renku.core.models.datasets.Dataset method)
(renku.core.models.datasets.DatasetFile method)
(renku.core.models.entities.Collection method)
(renku.core.models.entities.Entity method)
(renku.core.models.provenance.activities.Activity method)
(renku.core.models.provenance.activities.ProcessRun method)
(renku.core.models.provenance.activities.WorkflowRun method)
(renku.core.models.provenance.agents.Person method)
(renku.core.models.provenance.processes.Process method)
(renku.core.models.provenance.processes.Workflow method)
default_members() (renku.core.models.entities.Collection method)
default_message() (renku.core.models.provenance.activities.Activity method)
(renku.core.models.provenance.activities.ProcessRun method)
(renku.core.models.provenance.activities.WorkflowRun method)
default_outputs() (renku.core.models.provenance.activities.Activity method)
(renku.core.models.provenance.activities.ProcessRun method)
(renku.core.models.provenance.activities.WorkflowRun method)
default_path() (in module renku.core.management.repository)
default_person_agent() (renku.core.models.provenance.activities.Activity method)
(renku.core.models.provenance.activities.ProcessRun method)
(renku.core.models.provenance.activities.WorkflowRun method)
default_qualified_usage() (renku.core.models.provenance.activities.ProcessRun method)
(renku.core.models.provenance.activities.WorkflowRun method)
default_reference() (renku.core.models.datasets.Dataset method)
(renku.core.models.datasets.DatasetFile method)
(renku.core.models.entities.Collection method)
(renku.core.models.entities.Entity method)
(renku.core.models.provenance.activities.Activity method)
(renku.core.models.provenance.activities.ProcessRun method)
(renku.core.models.provenance.activities.WorkflowRun method)
(renku.core.models.provenance.agents.Person method)
(renku.core.models.provenance.agents.SoftwareAgent method)
(renku.core.models.provenance.processes.Process method)
(renku.core.models.provenance.processes.Workflow method)
(renku.core.models.provenance.qualified.Generation method)
(renku.core.models.provenance.qualified.Usage method)
default_started_at_time() (renku.core.models.provenance.activities.Activity method)
(renku.core.models.provenance.activities.ProcessRun method)
(renku.core.models.provenance.activities.WorkflowRun method)
default_subprocesses() (renku.core.models.provenance.activities.WorkflowRun method)
(renku.core.models.provenance.processes.Workflow method)
default_was_informed_by() (renku.core.models.provenance.activities.Activity method)
(renku.core.models.provenance.activities.ProcessRun method)
(renku.core.models.provenance.activities.WorkflowRun method)
delete() (renku.core.models.refs.LinkReference method)
delete_indirect_files_list() (renku.core.models.cwl.command_line_tool.CommandLineToolFactory method)
Directory (class in renku.core.models.cwl.types)
Dirent (class in renku.core.models.cwl.types)
dirty_paths (renku.core.management.git.GitCore attribute)
DownloadProgressCallback (class in renku.core.management.datasets)
E
editable (renku.core.models.datasets.Dataset attribute)
ensure_clean() (renku.core.management.git.GitCore method)
ensure_unstaged() (renku.core.management.git.GitCore method)
ensure_untracked() (renku.core.management.git.GitCore method)
entities (renku.core.models.datasets.Dataset attribute)
(renku.core.models.datasets.DatasetFile attribute)
(renku.core.models.entities.Collection attribute)
(renku.core.models.entities.Entity attribute)
Entity (class in renku.core.models.entities)
F
File (class in renku.core.models.cwl.types)
file_candidate() (renku.core.models.cwl.command_line_tool.CommandLineToolFactory method)
filter_repo_name() (in module renku.core.models.git)
finalize() (renku.core.management.datasets.DownloadProgressCallback method)
find_attr() (renku.core.management.git.GitCore method)
find_explicit_inputs() (renku.core.models.cwl.command_line_tool.CommandLineToolFactory method)
find_explicit_outputs() (renku.core.models.cwl.command_line_tool.CommandLineToolFactory method)
find_file() (renku.core.models.datasets.Dataset method)
find_ignored_paths() (renku.core.management.git.GitCore method)
find_previous_commit() (renku.core.management.repository.RepositoryApiMixin method)
from_commit() (renku.core.models.provenance.agents.Person class method)
(renku.core.models.provenance.agents.SoftwareAgent class method)
from_cwl() (renku.core.models.cwl.parameter.CommandInputParameter class method)
from_dict() (renku.core.models.provenance.agents.Person class method)
from_git() (renku.core.models.provenance.agents.Person class method)
from_jsonld() (renku.core.models.datasets.Dataset class method)
(renku.core.models.datasets.DatasetFile class method)
(renku.core.models.entities.Collection class method)
(renku.core.models.entities.Entity class method)
(renku.core.models.provenance.activities.Activity class method)
(renku.core.models.provenance.activities.ProcessRun class method)
(renku.core.models.provenance.activities.WorkflowRun class method)
(renku.core.models.provenance.agents.Person class method)
(renku.core.models.provenance.agents.SoftwareAgent class method)
(renku.core.models.provenance.processes.Process class method)
(renku.core.models.provenance.processes.Workflow class method)
(renku.core.models.provenance.qualified.Generation class method)
(renku.core.models.provenance.qualified.Usage class method)
from_revision() (renku.core.models.datasets.Dataset class method)
(renku.core.models.datasets.DatasetFile class method)
(renku.core.models.entities.Collection class method)
(renku.core.models.entities.Entity class method)
(renku.core.models.provenance.qualified.Usage class method)
from_string() (renku.core.models.provenance.agents.Person class method)
from_yaml() (renku.core.models.datasets.Dataset class method)
(renku.core.models.datasets.DatasetFile class method)
(renku.core.models.entities.Collection class method)
(renku.core.models.entities.Entity class method)
(renku.core.models.provenance.activities.Activity class method)
(renku.core.models.provenance.activities.ProcessRun class method)
(renku.core.models.provenance.activities.WorkflowRun class method)
(renku.core.models.provenance.agents.Person class method)
(renku.core.models.provenance.agents.SoftwareAgent class method)
(renku.core.models.provenance.processes.Process class method)
(renku.core.models.provenance.processes.Workflow class method)
(renku.core.models.provenance.qualified.Generation class method)
(renku.core.models.provenance.qualified.Usage class method)
full_path (renku.core.models.datasets.DatasetFile attribute)
G
generate_id() (renku.core.models.provenance.activities.Activity class method)
(renku.core.models.provenance.activities.ProcessRun class method)
(renku.core.models.provenance.activities.WorkflowRun class method)
generate_tool() (renku.core.models.cwl.command_line_tool.CommandLineToolFactory method)
Generation (class in renku.core.models.provenance.qualified)
get_dataset_path() (renku.core.management.datasets.DatasetsApiMixin method)
get_output_id() (renku.core.models.cwl.command_line_tool.CommandLineTool method)
(renku.core.models.cwl.workflow.Workflow method)
get_relative_url() (renku.core.management.datasets.DatasetsApiMixin method)
GitCore (class in renku.core.management.git)
GitURL (class in renku.core.models.git)
guess_inputs() (renku.core.models.cwl.command_line_tool.CommandLineToolFactory method)
guess_outputs() (renku.core.models.cwl.command_line_tool.CommandLineToolFactory method)
guess_type() (renku.core.models.cwl.command_line_tool.CommandLineToolFactory method)
I
image (renku.core.models.git.GitURL attribute)
import_from_template() (renku.core.management.repository.RepositoryApiMixin method)
init_repository() (renku.core.management.repository.RepositoryApiMixin method)
InputParameter (class in renku.core.models.cwl.parameter)
inputs
is_cwl() (renku.core.management.repository.RepositoryApiMixin method)
iter_input_files() (renku.core.models.cwl.process.Process method)
iter_items() (renku.core.models.refs.LinkReference class method)
iter_output_files() (renku.core.models.provenance.activities.ProcessRun method)
(renku.core.models.provenance.activities.WorkflowRun method)
L
LinkReference (class in renku.core.models.refs)
load_dataset() (renku.core.management.datasets.DatasetsApiMixin method)
load_dataset_from_path() (renku.core.management.datasets.DatasetsApiMixin method)
LocalClient (class in renku.core.management)
lock (renku.core.management.repository.RepositoryApiMixin attribute)
LOCK_SUFFIX (renku.core.management.repository.RepositoryApiMixin attribute)
M
METADATA (renku.core.management.repository.RepositoryApiMixin attribute)
model (renku.core.models.projects.ProjectCollection.Meta attribute)
modified_paths (renku.core.management.git.GitCore attribute)
N
name_validator() (renku.core.models.refs.LinkReference method)
nodes (renku.core.models.provenance.activities.Activity attribute)
(renku.core.models.provenance.activities.ProcessRun attribute)
(renku.core.models.provenance.activities.WorkflowRun attribute)
O
OutputParameter (class in renku.core.models.cwl.parameter)
outputs
P
Parameter (class in renku.core.models.cwl.parameter)
parent (renku.core.management.repository.RepositoryApiMixin attribute)
(renku.core.models.datasets.Dataset attribute)
(renku.core.models.datasets.DatasetFile attribute)
(renku.core.models.entities.Collection attribute)
(renku.core.models.entities.Entity attribute)
parents (renku.core.models.provenance.activities.Activity attribute)
(renku.core.models.provenance.activities.ProcessRun attribute)
(renku.core.models.provenance.activities.WorkflowRun attribute)
parse() (renku.core.models.git.GitURL class method)
path (renku.core.models.refs.LinkReference attribute)
path_converter() (in module renku.core.management.repository)
PathFormatterMixin (class in renku.core.models.cwl.types)
PathMixin (class in renku.core.management.repository)
paths (renku.core.models.provenance.activities.Activity attribute)
(renku.core.models.provenance.activities.ProcessRun attribute)
(renku.core.models.provenance.activities.WorkflowRun attribute)
Person (class in renku.core.models.provenance.agents)
plugin_annotations() (renku.core.models.provenance.activities.ProcessRun method)
(renku.core.models.provenance.activities.WorkflowRun method)
pre_run() (in module renku.core.plugins.run)
Process (class in renku.core.models.cwl.process)
(class in renku.core.models.provenance.processes)
process_commit() (renku.core.management.repository.RepositoryApiMixin method)
process_run_annotations() (in module renku.core.plugins.run)
ProcessRun (class in renku.core.models.provenance.activities)
Project (class in renku.core.models.projects)
project (renku.core.management.repository.RepositoryApiMixin attribute)
ProjectCollection (class in renku.core.models.projects)
ProjectCollection.Meta (class in renku.core.models.projects)
R
Range (class in renku.core.models.git)
read_files_list() (renku.core.models.cwl.command_line_tool.CommandLineToolFactory method)
reference (renku.core.models.refs.LinkReference attribute)
REFS (renku.core.models.refs.LinkReference attribute)
remote (renku.core.management.repository.RepositoryApiMixin attribute)
remove_dataset_tags() (renku.core.management.datasets.DatasetsApiMixin method)
remove_unmodified() (renku.core.management.git.GitCore method)
removed_paths (renku.core.models.provenance.activities.Activity attribute)
(renku.core.models.provenance.activities.ProcessRun attribute)
(renku.core.models.provenance.activities.WorkflowRun attribute)
rename() (renku.core.models.refs.LinkReference method)
rename_files() (renku.core.models.datasets.Dataset method)
renku.cli (module)
renku.cli.config (module)
renku.cli.dataset (module)
renku.cli.doctor (module)
renku.cli.exception_handler (module)
renku.cli.githooks (module)
renku.cli.init (module)
renku.cli.log (module)
renku.cli.migrate (module)
renku.cli.move (module)
renku.cli.remove (module)
renku.cli.rerun (module)
renku.cli.run (module)
renku.cli.show (module)
renku.cli.status (module)
renku.cli.storage (module)
renku.cli.update (module)
renku.cli.workflow (module)
renku.core.management (module)
renku.core.management.datasets (module)
renku.core.management.git (module)
renku.core.management.repository (module)
renku.core.models (module)
renku.core.models.cwl (module)
renku.core.models.cwl.command_line_tool (module)
renku.core.models.cwl.parameter (module)
renku.core.models.cwl.process (module)
renku.core.models.cwl.types (module)
renku.core.models.cwl.workflow (module)
renku.core.models.datasets (module)
renku.core.models.entities (module)
renku.core.models.git (module)
renku.core.models.projects (module)
renku.core.models.provenance (module)
renku.core.models.provenance.activities (module)
renku.core.models.provenance.agents (module)
renku.core.models.provenance.processes (module)
renku.core.models.provenance.qualified (module)
renku.core.models.refs (module)
renku.core.plugins.run (module)
renku_datasets_path (renku.core.management.datasets.DatasetsApiMixin attribute)
renku_home (renku.core.management.repository.RepositoryApiMixin attribute)
renku_metadata_path (renku.core.management.repository.RepositoryApiMixin attribute)
renku_path (renku.core.management.repository.RepositoryApiMixin attribute)
repo (renku.core.management.git.GitCore attribute)
RepositoryApiMixin (class in renku.core.management.repository)
resolve_in_submodules() (renku.core.management.repository.RepositoryApiMixin method)
rev_parse() (renku.core.models.git.Range class method)
S
set_reference() (renku.core.models.refs.LinkReference method)
short_id (renku.core.models.datasets.Dataset attribute)
short_name (renku.core.models.provenance.agents.Person attribute)
short_name_validator() (renku.core.models.datasets.Dataset method)
size_in_mb (renku.core.models.datasets.DatasetFile attribute)
SoftwareAgent (class in renku.core.models.provenance.agents)
split_command_and_args() (renku.core.models.cwl.command_line_tool.CommandLineToolFactory method)
STD_STREAMS_REPR (renku.core.models.cwl.command_line_tool.CommandLineTool attribute)
subclients() (renku.core.management.repository.RepositoryApiMixin method)
submodules (renku.core.management.repository.RepositoryApiMixin attribute)
(renku.core.models.datasets.Dataset attribute)
(renku.core.models.datasets.DatasetFile attribute)
(renku.core.models.entities.Collection attribute)
(renku.core.models.entities.Entity attribute)
(renku.core.models.provenance.activities.Activity attribute)
(renku.core.models.provenance.activities.ProcessRun attribute)
(renku.core.models.provenance.activities.WorkflowRun attribute)
(renku.core.models.provenance.processes.Process attribute)
(renku.core.models.provenance.processes.Workflow attribute)
T
tags_csv (renku.core.models.datasets.Dataset attribute)
to_argv() (renku.core.models.cwl.command_line_tool.CommandLineTool method)
(renku.core.models.cwl.parameter.CommandInputParameter method)
(renku.core.models.cwl.parameter.CommandLineBinding method)
to_yaml() (renku.core.models.datasets.Dataset method)
(renku.core.models.datasets.DatasetFile method)
(renku.core.models.entities.Collection method)
(renku.core.models.entities.Entity method)
(renku.core.models.provenance.activities.Activity method)
(renku.core.models.provenance.activities.ProcessRun method)
(renku.core.models.provenance.activities.WorkflowRun method)
(renku.core.models.provenance.agents.Person method)
(renku.core.models.provenance.agents.SoftwareAgent method)
(renku.core.models.provenance.processes.Process method)
(renku.core.models.provenance.processes.Workflow method)
(renku.core.models.provenance.qualified.Generation method)
(renku.core.models.provenance.qualified.Usage method)
tool
topological_steps (renku.core.models.cwl.workflow.Workflow attribute)
transaction() (renku.core.management.git.GitCore method)
U
uid (renku.core.models.datasets.Dataset attribute)
unlink_file() (renku.core.models.datasets.Dataset method)
update() (renku.core.management.datasets.DownloadProgressCallback method)
update_dataset_files() (renku.core.management.datasets.DatasetsApiMixin method)
update_files() (renku.core.models.datasets.Dataset method)
update_metadata() (renku.core.models.datasets.Dataset method)
Usage (class in renku.core.models.provenance.qualified)
V
validate_command_line() (renku.core.models.cwl.command_line_tool.CommandLineToolFactory method)
validate_path() (renku.core.models.cwl.command_line_tool.CommandLineToolFactory method)
W
watch() (renku.core.models.cwl.command_line_tool.CommandLineToolFactory method)
with_commit() (renku.core.management.repository.RepositoryApiMixin method)
with_dataset() (renku.core.management.datasets.DatasetsApiMixin method)
with_metadata() (renku.core.management.repository.RepositoryApiMixin method)
with_workflow_storage() (renku.core.management.repository.RepositoryApiMixin method)
Workflow (class in renku.core.models.cwl.workflow)
(class in renku.core.models.provenance.processes)
WORKFLOW (renku.core.management.repository.RepositoryApiMixin attribute)
workflow_names (renku.core.management.repository.RepositoryApiMixin attribute)
workflow_path (renku.core.management.repository.RepositoryApiMixin attribute)
WorkflowOutputParameter (class in renku.core.models.cwl.parameter)
WorkflowRun (class in renku.core.models.provenance.activities)
WorkflowStep (class in renku.core.models.cwl.workflow)
worktree() (renku.core.management.git.GitCore method)
Renku
連句
Python API and CLI for the Renku platform.
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0.9.1 (2020-02-24)
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